// get_arg.h
//

#if !defined(GETARG_H)
#define GETARG_H

#include <string>


class t_program_args
{
public:
	std::string  	taxon1;
	std::string  	taxon2;
	std::string		out_file_prefix;
	std::string		ks_file;
	// for initializing this struct
	friend
	bool process_command_line_options(int argc, char* argv[], t_program_args& args);
};

bool process_command_line_options(int argc, char* argv[], t_program_args& args);
#endif //GETARG_H

